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1

Unraveling the Motions behind Enterovirus 71 Uncoating

Ross, Caroline J., Atilgan, Ali Rana, Tastan Bishop, Özlem, Atilgan, Canan

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 5.48 MB

english, 2018

2

The PINIT domain of PIAS3: structure-function analysis of its interaction with STAT3

Nicodemus Mautsa, Earl Prinsloo, Özlem Tastan Bishop, Gregory L. Blatch

Journal:

Journal of Molecular Recognition

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

3

Comparative structural bioinformatics analysis ofBacillus amyloliquefacienschemotaxis proteins withinBacillus subtilisgroup

Anna Yssel, Oleg Reva, Ozlem Tastan Bishop

Journal:

Applied Microbiology and Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.14 MB

english, 2011

4

Study of protein complexes via homology modeling, applied to cysteine proteases and their protein inhibitors

Özlem Tastan Bishop, Matthys Kroon

Journal:

Journal of Molecular Modeling

Year:

2011

Language:

english

File:

PDF, 490 KB

english, 2011

5

A new approach to possible substrate binding mechanisms for nitrile hydratase

A. Özlem Taştan Bishop, Trevor Sewell

Journal:

Biochemical and Biophysical Research Communications

Year:

2006

Language:

english

File:

PDF, 510 KB

english, 2006

6

Plasmodium falciparum Hsp70-x: a heat shock protein at the host–parasite interface

Hatherley, Rowan, Blatch, Gregory L., Bishop, Özlem Tastan

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

7

Plasmodium falciparum Hop: Detailed analysis on complex formation with Hsp70 and Hsp90

Hatherley, Rowan, Clitheroe, Crystal-Leigh, Faya, Ngonidzashe, Tastan Bishop, Özlem

Journal:

Biochemical and Biophysical Research Communications

Year:

2015

Language:

english

File:

PDF, 2.04 MB

english, 2015

8

Sequence and domain conservation of the coelacanth Hsp40 and Hsp90 chaperones suggests conservation of function

Tastan Bishop, Özlem, Edkins, Adrienne Lesley, Blatch, Gregory Lloyd

Journal:

Journal of Experimental Zoology Part B: Molecular and Developmental Evolution

Year:

2014

Language:

english

File:

PDF, 7.64 MB

english, 2014

9

SANCDB: a South African natural compound database

Hatherley, Rowan, Brown, David K, Musyoka, Thommas M, Penkler, David L, Faya, Ngonidzashe, Lobb, Kevin A, Tastan Bishop, Özlem

Journal:

Journal of Cheminformatics

Year:

2015

Language:

english

File:

PDF, 2.07 MB

english, 2015

10

Analysis of Non-Peptidic Compounds as Potential Malarial Inhibitors against Plasmodial Cysteine Proteases via Integrated Virtual Screening Workflow

Musyoka, Thommas M., Kanzi, Aquillah M., Lobb, Kevin A., Tastan Bishop, Özlem

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 2.87 MB

english, 2015

11

Human, vector and parasite Hsp90 proteins: A comparative bioinformatics analysis

Faya, Ngonidzashe, Penkler, David L., Tastan Bishop, Özlem

Journal:

Year:

2015

Language:

english

File:

PDF, 4.80 MB

english, 2015

12

Subcellular localisation of Theiler's murine encephalomyelitis virus (TMEV) capsid subunit VP1 vis-á-vis host protein Hsp90

Ross, Caroline, Upfold, Nicole, Luke, Garry A., Bishop, Özlem Tastan, Knox, Caroline

Journal:

Year:

2016

Language:

english

File:

PDF, 3.05 MB

english, 2016

13

Structure Based Docking and Molecular Dynamic Studies of Plasmodial Cysteine Proteases against a South African Natural Compound and its Analogs

Musyoka, Thommas M., Kanzi, Aquillah M., Lobb, Kevin A., Tastan Bishop, Özlem

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 2.35 MB

english, 2016

14

Bioinformatic characterization of type-specific sequence and structural features in auxiliary activity family 9 proteins

Moses, Vuyani, Hatherley, Rowan, Tastan Bishop, Özlem

Journal:

Biotechnology for Biofuels

Year:

2016

Language:

english

File:

PDF, 10.22 MB

english, 2016

15

The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1

Cornick, Jennifer E., Tastan Bishop, Özlem, Yalcin, Feyruz, Kiran, Anmol M., Kumwenda, Benjamin, Chaguza, Chrispin, Govindpershad, Shanil, Ousmane, Sani, Senghore, Madikay, du Plessis, Mignon, Pluschk

Journal:

Year:

2017

Language:

english

File:

PDF, 1.64 MB

english, 2017

16

Role of Structural Bioinformatics in Drug Discovery by Computational SNP Analysis

Brown, David K., Tastan Bishop, Özlem

Journal:

Year:

2017

Language:

english

File:

PDF, 406 KB

english, 2017

17

Structure-Based Analysis of Single Nucleotide Variants in the Renin-Angiotensinogen Complex

Brown, David K., Sheik Amamuddy, Olivier, Tastan Bishop, Özlem

Journal:

Year:

2017

Language:

english

File:

PDF, 2.37 MB

english, 2017

18

The evaluation and validation of copper (II) force field parameters of the Auxiliary Activity family 9 enzymes

Moses, Vuyani, Tastan Bishop, Özlem, Lobb, Kevin A.

Journal:

Chemical Physics Letters

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

19

Interacting Motif Networks Located in Hotspots Associated with RNA Release are Conserved in Enterovirus Capsids

Ross, Caroline, Knox, Caroline, Bishop, Özlem Tastan

Journal:

Year:

2017

Language:

english

File:

PDF, 918 KB

english, 2017

20

Perturbation Response Scanning Reveals Key Residues for Allosteric Control in Hsp70

Penkler, David, Sensoy, Ozge, Atilgan, Canan, Tastan Bishop, Ozlem

Journal:

Journal of Chemical Information and Modeling

Year:

2017

Language:

english

File:

PDF, 2.20 MB

english, 2017

21

HUMA: A platform for the analysis of genetic variation in humans

Brown, David K., Tastan Bishop, Özlem

Journal:

Year:

2017

Language:

english

File:

PDF, 824 KB

english, 2017

22

Analysis of Protein Thermostability Enhancing Factors in Industrially Important Thermus Bacteria Species

Kumwenda, Benjamin, Litthauer, Derek, Bishop, Özlem Tastan, Reva, Oleg

Journal:

Evolutionary Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

23

The generation and characterisation of neutralising antibodies against the Theiler’s murine encephalomyelitis virus (TMEV) GDVII capsid reveals the potential binding site of the host cell co-receptor, heparan sulfate

Upfold, Nicole, Ross, Caroline, Bishop, Özlem Tastan, Luke, Garry A., Knox, Caroline

Journal:

Year:

2018

Language:

english

File:

PDF, 1.12 MB

english, 2018

24

Allosteric Modulation of Human Hsp90α Conformational Dynamics

Penkler, David, Atilgan, Canan, Tastan Bishop, Ozlem

Journal:

Journal of Chemical Information and Modeling

Year:

2018

Language:

english

File:

PDF, 3.40 MB

english, 2018

25

Improving fold resistance prediction of HIV-1 against protease and reverse transcriptase inhibitors using artificial neural networks

Sheik Amamuddy, Olivier, Bishop, Nigel T., Tastan Bishop, Özlem

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 589 KB

english, 2017

26

No evidence for association between APOL1 kidney disease risk alleles and Human African Trypanosomiasis in two Ugandan populations

Kimuda, Magambo Phillip, Noyes, Harry, Mulindwa, Julius, Enyaru, John, Alibu, Vincent Pius, Sidibe, Issa, Mumba Ngoyi, Dieuodonne, Hertz-Fowler, Christiane, MacLeod, Annette, Tastan Bishop, Özlem, Mat

Journal:

PLoS Neglected Tropical Diseases

Year:

2018

Language:

english

File:

PDF, 789 KB

english, 2018

27

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

Mulder, Nicola J., Christoffels, Alan, de Oliveira, Tulio, Gamieldien, Junaid, Hazelhurst, Scott, Joubert, Fourie, Kumuthini, Judit, Pillay, Ché S., Snoep, Jacky L., Tastan Bishop, Özlem, Tiffin, Nick

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 427 KB

english, 2016

28

Hepatitis C in Developing Countries || Hepatitis C and HIV Coinfection in Developing Countries

Bishop, Ozlem Tastan

Year:

2018

Language:

english

File:

PDF, 646 KB

english, 2018

29

The determination of CHARMM force field parameters for the Mg2+ containing HIV-1 integrase

Musyoka, Thommas, Tastan Bishop, Özlem, Lobb, Kevin, Moses, Vuyani

Journal:

Chemical Physics Letters

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

30

MODE-TASK: large-scale protein motion tools

Ross, Caroline, Nizami, Bilal, Glenister, Michael, Sheik Amamuddy, Olivier, Atilgan, Ali Rana, Atilgan, Canan, Tastan Bishop, Özlem, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 180 KB

english, 2018

31

Discorhabdin N, a South African Natural Compound, for Hsp72 and Hsc70 Allosteric Modulation: Combined Study of Molecular Modeling and Dynamic Residue Network Analysis

Amusengeri, Arnold, Tastan Bishop, Özlem

Journal:

Year:

2019

Language:

english

File:

PDF, 7.77 MB

english, 2019

32

Modulation of Human Hsp90α Conformational Dynamics by Allosteric Ligand Interaction at the C-Terminal Domain

Penkler, David L., Tastan Bishop, Özlem

Journal:

Scientific Reports

Year:

2019

File:

PDF, 4.04 MB

2019

33

Characterizing early drug resistance-related events using geometric ensembles from HIV protease dynamics

Sheik Amamuddy, Olivier, Bishop, Nigel T., Tastan Bishop, Özlem

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.06 MB

english, 2018

34

Modulation of Human Hsp90α Conformational Dynamics by Allosteric Ligand Interaction at the C-Terminal Domain

Penkler, David L., Tastan Bishop, Özlem

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 4.04 MB

english, 2019

35

Anti-HIV-1 integrase potency of methylgallate from Alchornea cordifolia using in vitro and in silico approaches

Siwe-Noundou, Xavier, Musyoka, Thommas M., Moses, Vuyani, Ndinteh, Derek T., Mnkandhla, Dumisani, Hoppe, Heinrich, Tastan Bishop, Özlem, Krause, Rui W. M.

Journal:

Scientific Reports

Year:

2019

File:

PDF, 3.25 MB

2019

36

Anti-HIV-1 integrase potency of methylgallate from Alchornea cordifolia using in vitro and in silico approaches

Siwe-Noundou, Xavier, Musyoka, Thommas M., Moses, Vuyani, Ndinteh, Derek T., Mnkandhla, Dumisani, Hoppe, Heinrich, Tastan Bishop, Özlem, Krause, Rui W. M.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 3.25 MB

english, 2019

37

Comparing sequence and structure of falcipains and human homologs at prodomain and catalytic active site for malarial peptide based inhibitor design

Musyoka, Thommas Mutemi, Njuguna, Joyce Njoki, Tastan Bishop, Özlem

Journal:

Malaria Journal

Year:

2019

Language:

english

File:

PDF, 8.49 MB

english, 2019

38

Comparing sequence and structure of falcipains and human homologs at prodomain and catalytic active site for malarial peptide based inhibitor design

Musyoka, Thommas Mutemi, Njuguna, Joyce Njoki, Tastan Bishop, Özlem

Journal:

Malaria Journal

Year:

2019

File:

PDF, 8.49 MB

2019

39

Establishing Computational Approaches Towards Identifying Malarial Allosteric Modulators: A Case Study of Plasmodium falciparum Hsp70s

Amusengeri, Arnold, Astl, Lindy, Lobb, Kevin, Verkhivker, Gennady M., Tastan Bishop, Özlem

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 4.55 MB

english, 2019

40

Establishing Computational Approaches Towards Identifying Malarial Allosteric Modulators: A Case Study of Plasmodium falciparum Hsp70s

Amusengeri, Arnold, Astl, Lindy, Lobb, Kevin, Verkhivker, Gennady M., Tastan Bishop, Özlem

Journal:

International Journal of Molecular Sciences

Year:

2019

File:

PDF, 4.55 MB

2019